PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00678.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 153aa    MW: 17282.4 Da    PI: 4.9888
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00678.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.11.6e-122767545
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                             ++ +r+ +NRe+ArrsR +K++ ++ L+  v +L++eN++ 
  Rsa1.0_00678.1_g00008.1 27 RKRKRMLSNRESARRSRMKKQKLLDDLTAQVIQLKKENDEI 67
                             7889**********************************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-102369No hitNo description
SMARTSM003384.1E-172387IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.0592588IPR004827Basic-leucine zipper domain
PfamPF001703.8E-92667IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.69E-122780No hitNo description
CDDcd147021.11E-182878No hitNo description
PROSITE patternPS0003603045IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDSSSSGTTS STIQTSSGPE ESLMEQRKRK RMLSNRESAR RSRMKKQKLL DDLTAQVIQL  60
KKENDEIVTS VSITTQHYLT VEAENSVLRA QLDELSHRLE SLNDIIGFLD NTNGICSNPL  120
SVPESDDFLV NQINMNMFYM NQPLMASEPH GIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12647RKRKRMLSNRESARRSRMKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0539401e-102AF053940.1 Arabidopsis thaliana transcription factor GBF6 (GBF6) mRNA, complete cds.
GenBankAL0230941e-102AL023094.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSA project).
GenBankAL1615851e-102AL161585.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81.
GenBankAY0639791e-102AY063979.1 Arabidopsis thaliana putative bZIP transcription factor ATB2 (At4g34590) mRNA, complete cds.
GenBankAY0963961e-102AY096396.1 Arabidopsis thaliana putative bZIP transcription factor ATB2 (At4g34590) mRNA, complete cds.
GenBankCP0026871e-102CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankX997471e-102X99747.1 A.thaliana ATB2 gene.
GenBankZ820431e-102Z82043.1 A.thaliana ATB2 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724998.12e-83PREDICTED: basic leucine zipper 63-like
RefseqXP_009138305.12e-83PREDICTED: basic leucine zipper 63-like
RefseqXP_013593652.12e-83PREDICTED: basic leucine zipper 1-like
TrEMBLA0A078I7C92e-83A0A078I7C9_BRANA; BnaA03g52920D protein
TrEMBLM4DMD12e-83M4DMD1_BRARP; Uncharacterized protein
TrEMBLA0A078C6N22e-83A0A078C6N2_BRANA; BnaC07g45120D protein
TrEMBLA0A0D3DHP62e-83A0A0D3DHP6_BRAOL; Uncharacterized protein
STRINGBra017664.1-P6e-83(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.17e-70G-box binding factor 6